Publications

A collection of my research work.

ARISE: RNA-Anchored Shared-Edge Topology and Hierarchical Fusion for Spatial Multi-Omics Integration

Xiangxiang Wang#, Yanchi Su#, Gaoyang Hao, Meng Wang, Yunhe Wang†, Xiangtao Li†

Bioinformatics 2026

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Bridging sequence-structure motifs and genetic variants for genome-wide dynamic RNA-protein interaction profiling

Yubo Wang, Haoran Zhu, Gaoyang Hao, Yanchi Su, Zhuohan Yu, Yuning Yang, Fuzhou Wang, Xingjian Chen, Ka-chun Wong, Xiangtao Li†

Nature Communications 2026

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Interpretable modality-aware mapping of gene regulation in single-cell multiomics with scMAGCA

Yunhe Wang#, Zeming Zhou#, Wei Liu#, Peiru Zhang, Yue Cheng, Yanchi Su, Fuzhou Wang, Ka-Chun Wong, Xiangtao Li†

Nature Communications 2026

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Orthogonal disentanglement of single-cell multi-omics reveals private and shared drivers of tissue development and pathogenesis

Yi Fan, Yanchi Su, Gaoyang Hao, Fuzhou Wang, Xingjian Chen, Ka-Chun Wong, Xiangtao Li†

Proceedings of the National Academy of Sciences 2026

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PAIR: Reconstructing Single-Cell Open-Chromatin Landscapes for Transcription Factor Regulome Mapping

Yanchi Su, Qi Qi, Yi Fan, Yubo Wang, Gaoyang Hao, Ka-Chun Wong, Yunhe Wang, Xiangtao Li†

Advanced Science 2026

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Aligned cross-modal integration and regulatory heterogeneity characterization of single-cell multiomic data with deep contrastive learning

Yue Cheng, Yanchi Su, Yi Fan, Yuning Yang, Xingjian Chen, Fuzhou Wang, Ka-Chun Wong, Xiangtao Li†

Genome Medicine 2026

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scSuperAnnotator: a platform for benchmarking comparison and visualizing automated cellular annotation methods for scRNA-seq data

Qi Qi#, Yanchi Su#, Yi Fan, Zhuohan Yu, Yujian Huang, Ka-Chun Wong, Xiangtao Li†

Nucleic Acids Research 2026

Hierarchical Multi-View Graph Diffusion Weighted Model for Cancer Subtype Identification

Yunhe Wang, Hang Zhang, Zhengyu Du, Yanchi Su†, Xiangtao Li

IEEE Journal of Biomedical and Health Informatics 2025

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Dynamic Synthesis of Multi-Modal Representations for CITE-seq Data Integration and Analysis

Dynamic Synthesis of Multi-Modal Representations for CITE-seq Data Integration and Analysis

Yinan Shi#, Yanchi Su#, Yue Cheng, Ka-Chun Wong, Yunhe Wang†, Xiangtao Li†

Advanced Science 2025

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DeepNanoHi-C: deep learning enables accurate single-cell nanopore long-read data analysis and 3D genome interpretation

DeepNanoHi-C: deep learning enables accurate single-cell nanopore long-read data analysis and 3D genome interpretation

Wenjing Ma, Fuzhou Wang, Yi Fan, Gaoyang Hao, Yanchi Su, Ka-Chun Wong, Xiangtao Li†

Nucleic Acids Research 2025

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Topological identification and interpretation for single-cell epigenetic regulation elucidation in multi-tasks using scAGDE

Gaoyang Hao, Yi Fan, Zhuohan Yu, Yanchi Su, Haoran Zhu, Fuzhou Wang, Xingjian Chen, Yuning Yang, Guohua Wang, Ka-chun Wong, Xiangtao Li†

Nature Communications 2025

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Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation

Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation

Yanchi Su, Zhuohan Yu, Yuning Yang, Ka-Chun Wong, Xiangtao Li†

Advanced Science 2024

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Bioinformatics-driven discovery of silica nanoparticles induces apoptosis and renal damage via the unfolded protein response in NRK-52E cells and rat kidney

Naimeng Liu, Meng Li, Huan Pang, Tiantian Tian, Xinyue Li, Yanchi Su, Minghua Jin, Hao Wu, Chuyue Qian, Mindan Sun

Computers in Biology and Medicine 2024

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Unsupervised deep embedded fusion representation of single-cell transcriptomics

Yue Cheng#, Yanchi Su#, Zhuohan Yu, Yanchun Liang, Ka-Chun Wong, Xiangtao Li†

Proceedings of the AAAI Conference on Artificial Intelligence 2023

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Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA

Zhuohan Yu, Yanchi Su, Yifu Lu, Yuning Yang, Fuzhou Wang, Shixiong Zhang, Yi Chang, Ka-Chun Wong, Xiangtao Li†

Nature Communications 2023

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Hyperspectral image denoising via weighted multidirectional low-rank tensor recovery

Yanchi Su, Haoran Zhu, Ka-Chun Wong, Yi Chang, Xiangtao Li†

IEEE Transactions on Cybernetics 2022

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scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information

Yanchi Su, Fuzhou Wang, Shixiong Zhang, Yanchun Liang, Ka-Chun Wong, Xiangtao Li†

Bioinformatics 2022

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scEFSC: Accurate single-cell RNA-seq data analysis via ensemble consensus clustering based on multiple feature selections

Chuang Bian, Xubin Wang, Yanchi Su, Yunhe Wang, Ka-Chun Wong, Xiangtao Li†

Computational and Structural Biotechnology Journal 2022

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Hyperspectral mixed noise removal via subspace representation and weighted low-rank tensor regularization

Hao Zhou, Yanchi Su, Zhanshan Li

arXiv:2111.07044 2021

Medical image fusion based on convolutional neural networks and non-subsampled contourlet transform

Zeyu Wang, Xiongfei Li†, Haoran Duan, Yanchi Su, Xiaoli Zhang, Xinjiang Guan

Expert Systems with Applications 2021

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Multi-band weighted lp norm minimization for image denoising

Yanchi Su, Zhanshan Li, Haokun Yu, Zeyu Wang

Information Sciences 2020

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